Animesh Awasthi

Product Engineer

Vienna, Vienna, Austria7 yrs 5 mos experience
Most Likely To Switch

Key Highlights

  • Expert in deep learning methods for biology.
  • Led multiple student welfare initiatives impacting thousands.
  • Published research on drug discovery for SARS-CoV-2.
Stackforce AI infers this person is a Healthcare-focused researcher with expertise in machine learning and drug discovery.

Contact

Skills

Core Skills

Deep LearningDrug-target InteractionLeadershipManagementData AnalysisPython (programming Language)TransformersProtein Contact MapMachine LearningMolecular DockingMolecular Dynamics

Other Skills

Adobe PhotoshopBadmintonBiochemistryBiotechnologyC (Programming Language)CommunicationComputer-Aided Design (CAD)Convolutional Neural Networks (CNN)CricketData StructuresElocutionGenomicsGraph-based MethodsLong Short-term Memory (LSTM)MATLAB

About

I am a PhD student at the CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences and an ELLIS PhD at the Bock Lab (https://www.bocklab.org/). My research focuses on developing deep learning methods to understand the fundamental underpinnings of biology.

Experience

7 yrs 5 mos
Total Experience
1 yr 4 mos
Average Tenure
2 yrs 10 mos
Current Experience

Cemm

Pre Doctoral Fellow

Aug 2023Present · 2 yrs 10 mos · On-site

  • Christoph Bock Lab - Medical Epigenomics Lab

Medizinische universität wien

PHD Student

Aug 2023Present · 2 yrs 10 mos · Vienna, Austria · On-site

  • Center for Medical Data Science - Institute of Artificial Intelligence - Bock Group

Ellis - european laboratory for learning and intelligent systems

Doctoral Student

Aug 2023Present · 2 yrs 10 mos · Vienna, Austria

  • Pursuing a PhD in ML applied to Biomedicine
  • Primary supervisor: Prof. Christoph Bock (CeMM & Medical University of Vienna)
  • Co-supervisor: Prof. Erik Bekkers (University of Amsterdam)

Indian institute of technology, kharagpur

Master Thesis

Aug 2022May 2023 · 9 mos

  • Title: A deep learning approach to predict drug-target interactions for kinase inhibitors
  • Supervisor: Prof. Riddhiman Dhar (IIT Kharagpur) & Dr Matthew The (TU Munich)
  • Identified several kinases as drug targets for cancer treatment and prepared a drug-protein interaction database
  • Deploying graph-based methods to extract drug features and sequence-based approaches to extract protein features
  • Developing a deep learning method to predict drug-protein interaction using multi-head attention mechanism
Deep LearningDrug-Target InteractionGraph-based MethodsMulti-head Attention mechanism

University of lausanne - unil

Summer Undergraduate Research (SUR) Scholar

Jul 2022Aug 2022 · 1 mo · Lausanne, Vaud, Switzerland

  • Deciphering protein-protein interactions to build a computational vaccine construct using machine learning.
Data AnalysisPython (Programming Language)

Apt research private limited

Data Management and Research

May 2022Jun 2022 · 1 mo · Bengaluru, Karnataka, India

  • To develop the quantitative research pipeline and predict future trade movements using machine learning.
TransformersProtein Contact MapMulti-head Attention mechanism

The university of tokyo

UTSIP Scholar - Summer Intern

Jun 2021Jul 2021 · 1 mo · Tokyo, Tokyo, Japan

  • Among the 15 students selected worldwide for the University of Tokyo Summer Internship Program Online Intensive (UTSIP Kashiwa).
  • Performed research under the guidance of Prof. Martin Frith, Department of Computational Biology and Medical Sciences, GSFS, UTokyo (Kashiwa Campus).
  • My project revolved around understanding, analyzing and comparing sparse-seeding algorithms such as Minimizers, Syncmers and Minimally overlapping words.
Molecular dockingMolecular DynamicsComputer-Aided Design (CAD)MTT assayPCAWestern Blotting+1

Student welfare group, iit kharagpur

4 roles

Governor

Promoted

Apr 2021May 2023 · 2 yrs 1 mo

  • Governing a team of 50+ heads, student members, and associates addressing prominent issues related to students of IIT Kharagpur
  • Supervised several student welfare initiatives like the Student Mentorship Programme, Foresight etc., involving more than 10,000 students
LeadershipManagement

Head Team Memeber

Promoted

Oct 2020Apr 2021 · 6 mos

  • A Student Body working under Gymkhana, IIT Kharagpur
  • Administered Student Mentor Programme 2020-21 covering about 1800 UG freshmen
  • Managed an online portal actively used by 2000+ students facilitating them academically
  • Leading a team of 30 student members and 35 Associates addressing prominent student-related issues
LeadershipManagement

Student Member

Jan 2020Sep 2020 · 8 mos

  • Conducted Student Mentor-Mentee Meeting program, Examania, and Foresight
  • Conducted Campus tour which saw a participation of 1400+ freshers
  • Lead a team of 32 Associates conducting activities for the welfare of students in the campus of IIT Kharagpur

Associate

Mar 2019Dec 2019 · 9 mos

  • A Student Body under The Office of Dean of Students’ Affairs. Conducts Student Mentor-Mentee Meeting programme, Placement Drive, Examania, Placement Talk, Bhamini & Programming and Data Structures Doubt Sessions, Virtual Mentor-Mentee Meeting, Early Mentor Selection. Also conducted python workshop for 1st and 2nd-year students and KGP Blood Connect (KBC) programme in respective Halls.

Neurobit technologies

Software Engineer

Apr 2021May 2022 · 1 yr 1 mo · Singapore

  • To build the AI and analytics pipelines of Neurobit for predictive health and personalized medicine
  • Assisted researchers from Columbia University and NUS in evaluating the performance of AI models built by Neurobit
  • Designed and deployed a 34-layer Convolutional Neural Network to predict Arrhythmia events from physiological data
  • Developed a scalable recommendation system to generate a personalized health report using physiological sleep data
XGBoostConvolutional Neural Networks (CNN)Long Short-term Memory (LSTM)Python (Programming Language)Time Series AnalysisMachine Learning+1

Cosmos lab, department of computer science and engineering, iit kharagpur

Bachelor Thesis

Apr 2021Apr 2022 · 1 yr · Kharagpur, West Bengal, India

  • Title: To discover potential drug inhibitors against Glioblastoma using in silico and in vitro study (Bachelor’s Thesis)
  • Supervisor: Prof. Mahitosh Mandal (School of Medical Science) & Prof. Pralay Mitra (Department of Computer Science)
  • Virtually screened approved drugs inhibiting Glioblastoma progression using molecular docking and MD simulations
  • Validated the top hits in vitro, using cell proliferation MTT assay and western blotting on cultured glioma cell lines

Systems biology lab, iit kharagpur

Research Project

Mar 2021May 2023 · 2 yrs 2 mos

  • Title: Discovering potential drugs for inhibiting the interaction of hACE2 receptor and spike protein across multiple SARS-CoV-2 variants of concern
  • Supervisor: Prof. Riddhiman Dhar (Department of Biotechnology)
  • Developed a computational method to screen drugs against protein targets across several variants of a pathogen
  • Automated the MD simulation pipeline and discovered two effective drugs by simulating drug-protein complexes
  • Presented research in the 9th IWBBIO Conference 2022, Spain on computationally discovering drugs against SARS-CoV-2 and its variants

Institute of bioinformatics and applied biotechnology (ibab)

Project Intern

Jul 2020Dec 2020 · 5 mos · Bengaluru, Karnataka, India

  • Worked on three projects during the internship at SharmaG_omics lab.
  • Project 1: To understand phage-host interaction among tailed phages. | Supervisor: Dr. Gaurav Sharma
  • Project 2: To develop a tool to analyze general genomic features for a given sequence. | Supervisor: Dr. Gaurav Sharma
  • Project 3: Written a book chapter titled “Computational approach for Vaccine Designing” for the book “Bioinformatics: Methods and Application” (Elsevier) | Supervisor: Dr. Gaurav Sharma.

Inter iit sports meet

Core Team Member

Sep 2019Feb 2020 · 5 mos

  • Generated INR 3.55 Million through Sponsorship from 34 companies (200% YOY Increase) for the 54th edition of Inter IIT Sports Meet
  • Organized 548 sporting events, 2 Pronites and 2 Guest lectures which saw a participation of 3000+ students and coaches from all the 23 IITs.
  • Part of a team of 12 Core Team Members responsible for catering the branding & publicity requirements of all the 34 companies during the 54th Inter IIT Sports Meet

Students'​ alumni cell, office of alumni affairs, iit kharagpur

Associate

Oct 2018Apr 2019 · 6 mos · Kharagpur I, India

  • As an Associate Member, I assisted the team working primarily on three fronts: Networking, Corporate Media Bannering, and Event Management with an objective to keep the alumni connected to their Alma Mater and to keep them updated about the latest happenings in the Institute. We organized the 16th Annual Alumni Meet to reconnect the alumni.

Education

Indian Institute of Technology, Kharagpur

Dual Degree (Btech+Mtech) — Biotechnology

Jan 2018Jan 2023

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