S

Shorya Consul

AI Researcher

San Diego, California, United States8 yrs 6 mos experience
Highly Stable

Key Highlights

  • Expert in developing algorithms for genomic data inference.
  • Pioneered transformer-based approaches in bioinformatics.
  • Strong background in machine learning and computational genomics.
Stackforce AI infers this person is a Bioinformatics and Machine Learning expert with a focus on healthcare applications.

Contact

Skills

Core Skills

Computational GenomicsMachine LearningDeep LearningTeaching

Other Skills

C++CommunicationMatlabGitHubPyTorchOrganization SkillsPython (Programming Language)Research SkillsBashTensorFlowScikit-LearnData EngineeringSocial MediaLaTeXMicrosoft Office

About

How would I describe myself succintly? A problem-solver at heart, an engineer by trade. Some background: I grew up gorging on books and documentaries. This might sound odd but it's true; my birthday present for my ninth birthday were three encyclopedias and soon after, the only non-news channels we had were National Geographic, Animal Planet and Discovery. So, it should come as no surprise that I have long held a deep interest in the manifestation of Science in Nature; for this reason, Physics and Biology in particular have always fascinated me. What I do: I work at the intersection of electrical engineering/computer science and bioinformatics. Specifically, my focus lies in the development of algorithms for inference from genomic datasets, such as DNA sequencing read mixtures. Of late, the algorithmic frameworks I have designed employ the latest developments in the burgeoning field of machine/deep learning. More generally, I am interested in applying the skills as an engineer and researcher in solving real-world problems, so that I can make a tangible impact with my work. Outside of work, I love to read novels (fantasy, mystery and sci-fi being my go-to genres), hike or play ultimate frisbee and tennis.

Experience

8 yrs 6 mos
Total Experience
7 yrs
Average Tenure
1 yr 6 mos
Current Experience

Quantum-si

2 roles

Senior Computational Scientist

Dec 2024Present · 1 yr 6 mos

Computational GenomicsMachine Learning

Computational Scientist Intern

Aug 2024Nov 2024 · 3 mos

Arm

Research Intern

May 2020Aug 2020 · 3 mos · Austin, Texas, United States · Remote

  • Data & AI Services (DAIS) Team in ARM Research
  • Abstracted the problem of advertising recommendations based on user clicks and developed a variational autoencoder to encode ad slates and reinforcement learning-based approach to improve funneling.
TensorFlowPython (Programming Language)Research SkillsMachine Learning

Cognitivescale

Intern

Jun 2019Aug 2019 · 2 mos · Austin, Texas Metropolitan Area

  • Machine Learning Team
  • Developed an AI risk assessment tool to score black-box regression models on 4 metrics, including explainability and fairness. This has been productionized in Cortex CERTIFAI.
  • Interacted with industry stakeholders and proposed a responsible AI framework for insurance. Team placed first in company-wide Shark Tank competition on products for responsible AI.
Scikit-LearnData EngineeringGitHubOrganization SkillsPython (Programming Language)Research Skills+1

The university of texas at austin

3 roles

Teaching Assistant

Jan 2019May 2019 · 4 mos

  • Teaching assistant for EE 351M - Digital Signal Processing
  • Held regular office hours for over 60 students to answer questions pertaining to the course material and homeworks.
TeachingCommunication

Graduate Research Assistant

Promoted

May 2018Aug 2024 · 6 yrs 3 mos

  • Haplotype Assembly using Long-distance Read Correlations Learned by Transformer
  • Pioneered a transformer-based approach, XHap, for reference-based haplotype assembly from sequencing reads. XHap infers a 40% richer correlation structure and reconstructs > 300× longer haplotypes accurately.
  • Incorporated parallelization across 4 GPUs and preprocessed data using Bash and C++ scripts for benchmarking XHap on > 100GB of human sequencing reads.
  • Transformer-based Oncoviral Read Identification from Cancer Samples
  • Led the development of a pipeline in PyTorch (XVir) for oncoviral read identification through the use of a transformer-based classifier, achieving 99% accuracy.
  • XVir trains > 8× faster than SOTA methods and robust to as much as 15% diversity in the oncoviral families.
  • Differentially Private Median Forests
  • Proposed a median-based approach to construct differentially private decision trees to privacy preserving noise in the splits and node statistics.
  • The superior accuracy of the designed approach was validated with error bars over 10 datasets for both regression and classification and 10+ hyperparameter settings.
  • Reconstructing Intra-tumor Heterogeneity via Convex Optimization and Branch-and-Bound Search
  • Formulated the problem of copy number inference in tumors as matrix factorization.
  • Designed computationally efficient and accurate approach in MATLAB that sped up inference almost 10×.
C++CommunicationMatlabGitHubPyTorchOrganization Skills+5

Teaching Assistant

Aug 2017May 2018 · 9 mos

  • Teaching assistant for EE 362K - Introduction to Automatic Control
  • Held regular office hours for over 60 students to answer questions pertaining to the course material and homeworks.
  • Helped in formulating homeworks and examinations.
TeachingCommunication

Massachusetts institute of technology (mit)

Research Intern in Energy-Efficient Circuits and Systems Group

May 2016Jul 2016 · 2 mos · Cambridge, Massachusetts

  • Developed a set-up on a development board to measure power consumption of on-board CPU and GPU of any code. This could then be used with a profiler to identify areas for optimization.
Python (Programming Language)

Oxford brookes university

Research Intern

May 2015Jul 2015 · 2 mos · Greater Oxford Area

Education

The University of Texas at Austin

Doctor of Philosophy - PhD — Electrical and Computer Engineering (ECE)

The University of Texas at Austin

Master of Science - MS — Electrical and Computer Engineering (ECE)

Indian Institute of Technology, Bombay

Bachelor's Degree — Electrical Engineering

Raffles Institution

High School — High School/Secondary Diplomas and Certificates

Step By Step High School, Jaipur

High School (CBSE)

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